MRIQC: individual T1w report

Summary

  • BIDS filename: sub-4033_ses-1_T1w.
  • Date and time: 2022-11-02, 17:35.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.42040332185287366
cnr3.0391833780868454
efc0.5804541559428827
fber889.5019473465237
fwhmavg4.213806666666667
fwhmx4.16825
fwhmy4.75659
fwhmz3.71658
icvscsf0.20960325703395163
icvsgm0.4136780781105107
icvswm0.3767186648555376
inumed1.4512639045715332
inurange0.633174866437912
qi10.0
qi20.005189418015310668
rpvecsf30.277178951483183
rpvegm15.71337303765658
rpvewm20.48917006870813
sizex176
sizey256
sizez256
snrcsf3.4196817559815313
snrgm11.322250332427013
snrtotal12.075371777327085
snrwm21.484183243572712
snrdcsf29.07351914518495
snrdgm58.64415640847186
snrdtotal55.23403132847617
snrdwm77.98441843177172
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.8849236934735423
summarybgmad8.400862762981696
summarybgmean20.91487229629454
summarybgmedian20.03440310060978
summarybgn2573288.0
summarybgp058.65121952071786
summarybgp9537.03329057991505
summarybgstdv9.014934337320609
summarycsfk5.209024301658502
summarycsfmad121.43747154703006
summarycsfmean390.7170213137747
summarycsfmedian372.8119102232158
summarycsfn20974.0
summarycsfp05241.3234918937087
summarycsfp95572.8017977401614
summarycsfstdv109.01687620129982
summarygmk0.362361776408771
summarygmmad62.70643990939909
summarygmmean754.718473158748
summarygmmedian751.9984032511711
summarygmn14530.0
summarygmp05651.2192846238613
summarygmp95871.372584655322
summarygmstdv66.41546541435913
summarywmk0.7270251776906744
summarywmmad41.55426759546303
summarywmmean995.8406139264633
summarywmmedian1000.0000295117497
summarywmn175716.0
summarywmp05910.1487671211362
summarywmp951064.9094718806446
summarywmstdv46.54573891265269
tpmoverlapcsf0.14541086554527283
tpmoverlapgm0.4368496239185333
tpmoverlapwm0.4850854277610779
wm2max0.7070185794474033
AcquisitionMatrixPE246
AcquisitionNumber1
AcquisitionTime10:25:59.177500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[-0.0224311, 0.956216, 0.2918, -0.0810417, 0.289174, -0.95384]
ImageOrientationTextSag>Tra(4.1)>Cor(-2.6)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling96
PhaseEncodingSteps185
PhaseResolution0.96
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0298225
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP\OSP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber19
ShimSetting[2620, 5365, -7479, 22, -14, -840, 44, -118]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp228.423
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum610e30f867168512f27211c99f0ef765
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.